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  5. LOC_Os06g46400.1

LOC_Os06g46400.1 (CPSF30, ATCPSF30,...)


Aliases : CPSF30, ATCPSF30, LOC_Os06g46400

Description : component CPSF30/Yth1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0003202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003202_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g46400.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00079840 CPSF30,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Adi_g103333 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ala_g15633 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Als_g21038 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Aob_g28233 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Cba_g03380 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ceric.29G075600.1 CPSF30,... component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.08 OrthoFinder output from all 47 species
GSVIVT01021617001 CPSF30, ATCPSF30 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Lfl_g10477 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
MA_10428531g0010 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
MA_61605g0010 CPSF30, ATCPSF30 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp6g15200.1 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Pir_g42075 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Sam_g17308 No alias component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Solyc02g021760.3.1 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Solyc02g070240.3.1 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Spa_g05222 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Spa_g37920 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Zm00001e012971_P001 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Zm00001e030326_P001 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007275 YTH_domain 260 394
No external refs found!