1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g44450.1

LOC_Os06g44450.1 (ATCOL5, COL5, LOC_Os06g44450)


Aliases : ATCOL5, COL5, LOC_Os06g44450

Description : Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana (sp|q96502|col2_arath : 80.9)


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g44450.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 COL2, ATCOL2,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00192190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.05 OrthoFinder output from all 47 species
AT5G15850 COL1, ATCOL1 CONSTANS-like 1 0.05 OrthoFinder output from all 47 species
AT5G24930 ATCOL4, COL4 CONSTANS-like 4 0.06 OrthoFinder output from all 47 species
Cba_g10222 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g64490 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.20G041500.1 ATCOL4, COL4,... floral promoter *(CONSTANS) & original description:... 0.03 OrthoFinder output from all 47 species
Cre12.g534100 COL2, ATCOL2 No description available 0.01 OrthoFinder output from all 47 species
Dac_g09279 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03545 COL3, ATCOL3 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18769 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01029107001 ATCOL5, COL5 Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01036037001 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
GSVIVT01036499001 COL2, ATCOL2 RNA biosynthesis.transcriptional activation.C2C2... 0.05 OrthoFinder output from all 47 species
Len_g00571 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17115 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08431 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20271 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g34612 ATCOL4, COL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g22158 ATCOL5, COL5 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10567 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g48282 COL1, ATCOL1 floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26598 No alias floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26599 No alias floral promoter *(CONSTANS) & original description: none 0.02 OrthoFinder output from all 47 species
Smo102902 COL2, ATCOL2 Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo185898 ATCOL4, COL4 RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Solyc02g089540.3.1 COL2, ATCOL2,... transcription factor (BBX-CO) 0.06 OrthoFinder output from all 47 species
Zm00001e002319_P001 ATCOL4, COL4,... Transcription factor GHD7 OS=Oryza sativa subsp.... 0.06 OrthoFinder output from all 47 species
Zm00001e007691_P001 Zm00001e007691 transcription factor (BBX-CO) 0.08 OrthoFinder output from all 47 species
Zm00001e013804_P001 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e021565_P001 ATCOL4, COL4,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e037706_P002 ATCOL5, COL5,... Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e037873_P001 ATCOL4, COL4,... no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Zm00001e039922_P001 COL3, ATCOL3,... no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e041152_P001 ATCOL5, COL5,... transcription factor (BBX-CO) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 295 337
No external refs found!