1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g43590.2

LOC_Os06g43590.2 (CHMP1A, VPS46.2,...)


Aliases : CHMP1A, VPS46.2, LOC_Os06g43590

Description : VPS46/CHMP1 associated protein of ESCRT-III complex


Gene families : OG0001221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001221_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g43590.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00206680 CHMP1A, VPS46.2,... Vesicle trafficking.endomembrane trafficking.ESCRT... 0.04 OrthoFinder output from all 47 species
AT1G73030 CHMP1A, VPS46.2 SNF7 family protein 0.06 OrthoFinder output from all 47 species
Adi_g015566 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.02 OrthoFinder output from all 47 species
Als_g37412 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.02 OrthoFinder output from all 47 species
Cba_g14759 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.02 OrthoFinder output from all 47 species
Ceric.28G030800.1 CHMP1A, VPS46.2,... associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.03 OrthoFinder output from all 47 species
Dcu_g45737 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.02 OrthoFinder output from all 47 species
Dde_g04202 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.03 OrthoFinder output from all 47 species
Gb_40149 CHMP1B, VPS46.1 VPS46/CHMP1 associated protein of ESCRT-III complex 0.03 OrthoFinder output from all 47 species
Len_g10600 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.02 OrthoFinder output from all 47 species
Mp5g17770.1 CHMP1B, VPS46.1 VPS46/CHMP1 associated protein of ESCRT-III complex 0.03 OrthoFinder output from all 47 species
Sam_g47406 No alias associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.02 OrthoFinder output from all 47 species
Solyc03g121360.1.1 CHMP1B, VPS46.1,... VPS46/CHMP1 associated protein of ESCRT-III complex 0.03 OrthoFinder output from all 47 species
Spa_g08488 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.02 OrthoFinder output from all 47 species
Spa_g08489 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.03 OrthoFinder output from all 47 species
Zm00001e037486_P001 CHMP1A, VPS46.2,... VPS46/CHMP1 associated protein of ESCRT-III complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR005024 Snf7_fam 13 175
No external refs found!