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  5. LOC_Os06g41730.1

LOC_Os06g41730.1 (LOC_Os06g41730)


Aliases : LOC_Os06g41730

Description : transcription factor (ARID)


Gene families : OG0002366 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002366_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g41730.1

Target Alias Description ECC score Gene Family Method Actions
AT2G17410 No alias ARID/BRIGHT DNA-binding domain-containing protein 0.03 OrthoFinder output from all 47 species
Als_g11180 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14261 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g14994 No alias ARID-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g15073 No alias ARID-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g07310.1 No alias transcription factor (ARID) 0.02 OrthoFinder output from all 47 species
Pir_g11306 No alias ARID-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06881 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012304 No alias ARID-type transcription factor & original description: CDS=1-1431 0.02 OrthoFinder output from all 47 species
Sam_g19197 No alias ARID-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19198 No alias ARID-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52440 No alias ARID-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g05354 No alias ARID-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e037576_P002 Zm00001e037576 transcription factor (ARID) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001606 ARID_dom 167 251
IPR002068 A-crystallin/Hsp20_dom 377 459
No external refs found!