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  5. LOC_Os06g40960.1

LOC_Os06g40960.1 (WIP2, NTT, LOC_Os06g40960)


Aliases : WIP2, NTT, LOC_Os06g40960

Description : C2H2 zinc finger transcription factor


Gene families : OG0001814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001814_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g40960.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00093p00164790 WIP6, DOT5,... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 OrthoFinder output from all 47 species
AT1G51220 WIP5 WIP domain protein 5 0.02 OrthoFinder output from all 47 species
AT3G20880 WIP4 WIP domain protein 4 0.01 OrthoFinder output from all 47 species
Aev_g05354 WIP2, NTT C2H2 subclass WIP transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ala_g26211 WIP5 C2H2 subclass WIP transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aob_g27587 WIP2, NTT C2H2 subclass WIP transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene00894.t1 WIP2, NTT,... C2H2 subclass WIP transcription factor & original... 0.01 OrthoFinder output from all 47 species
GSVIVT01009046001 TT1, WIP1 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
Gb_21793 WIP2, NTT C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
LOC_Os08g39390.1 WIP2, NTT, LOC_Os08g39390 C2H2 zinc finger transcription factor 0.01 OrthoFinder output from all 47 species
Len_g56482 WIP5 C2H2 subclass WIP transcription factor & original... 0.02 OrthoFinder output from all 47 species
Lfl_g15647 WIP2, NTT C2H2 subclass WIP transcription factor & original... 0.02 OrthoFinder output from all 47 species
MA_3555g0010 WIP6, DOT5 C2H2 zinc finger transcription factor 0.01 OrthoFinder output from all 47 species
Pir_g38869 WIP3 C2H2 subclass WIP transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pnu_g12905 WIP2, NTT C2H2 subclass WIP transcription factor & original... 0.01 OrthoFinder output from all 47 species
Pp3c15_17790V3.1 WIP2, NTT, Pp3c15_17790 C2H2-type zinc finger family protein 0.02 OrthoFinder output from all 47 species
Smo36987 WIP2, NTT RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.1 OrthoFinder output from all 47 species
Solyc03g059270.4.1 WIP2, NTT, Solyc03g059270 C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Solyc06g074360.4.1 WIP3, Solyc06g074360 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e003504_P001 WIP2, NTT, Zm00001e003504 C2H2 zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e024373_P001 WIP2, NTT, Zm00001e024373 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e033781_P001 WIP6, DOT5,... C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!