LOC_Os06g40950.1 (NRPA1, LOC_Os06g40950)

Aliases : NRPA1, LOC_Os06g40950

Description : DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana (sp|q9svy0|nrpa1_arath : 241.0)

Gene families : OG0004546 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004546_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g40950.1
Cluster	HCCA: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00245030	NRPA1,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.07	OrthoFinder output from all 47 species
Aev_g16831	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
Ala_g04619	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.03	OrthoFinder output from all 47 species
Als_g04499	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
Azfi_s0021.g015776	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
Ceric.21G029700.1	NRPA1, Ceric.21G029700	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000203.25	NRPA1	DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre12.g529600	NRPA1	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.07	OrthoFinder output from all 47 species
Dcu_g03205	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
Ehy_g01703	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
GSVIVT01033327001	NRPA1	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
Len_g21129	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
Mp6g07700.1	NRPA1	subunit 1 of Pol I RNA polymerase	0.04	OrthoFinder output from all 47 species
Msp_g14971	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
Ppi_g01414	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
Smo438401	NRPA1	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Solyc10g080350.3.1	NRPA1, Solyc10g080350	subunit 1 of Pol I RNA polymerase	0.06	OrthoFinder output from all 47 species
Spa_g18742	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
Tin_g27548	NRPA1	component *(NRPA1) of RNA polymerase I complex &...	0.02	OrthoFinder output from all 47 species
Zm00001e001577_P005	NRPA1, Zm00001e001577	subunit 1 of Pol I RNA polymerase	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	99	292

External Links

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LOC_Os06g40950.1 (NRPA1, LOC_Os06g40950)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation