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  5. LOC_Os06g35470.1

LOC_Os06g35470.1 (LOC_Os06g35470)


Aliases : LOC_Os06g35470

Description : component mtRPL1 of large ribosomal subunit proteome


Gene families : OG0002232 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002232_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g35470.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00130p00080480 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
AT2G42710 No alias Ribosomal protein L1p/L10e family 0.13 OrthoFinder output from all 47 species
Als_g03690 No alias component *(uL1m) of large mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g25894 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.35G025200.1 Ceric.35G025200 component *(uL1m) of large mitoribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021357.72 No alias 50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea 0.01 OrthoFinder output from all 47 species
Cre02.g088900 No alias Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
Dac_g03702 No alias component *(uL1m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g18381 No alias component *(uL1m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ehy_g11324 No alias component *(uL1m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01020727001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Lfl_g01329 No alias component *(uL1m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
MA_10112138g0010 No alias 50S ribosomal protein L1, chloroplastic OS=Spinacia... 0.03 OrthoFinder output from all 47 species
Mp1g07500.1 No alias component psRPL1 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Ppi_g62127 No alias component *(uL1m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019423 No alias component *(uL1m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g13572 No alias component *(uL1m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Solyc12g013990.3.1 Solyc12g013990 component mtRPL1 of large ribosomal subunit proteome 0.15 OrthoFinder output from all 47 species
Zm00001e037138_P001 Zm00001e037138 component mtRPL1 of large ribosomal subunit proteome 0.23 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 200 393
No external refs found!