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  5. LOC_Os02g19860.1

LOC_Os02g19860.1


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana (sp|q38953|deah5_arath : 1675.0)


Gene families : OG_01_0000159 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000159_tree ,
OG_02_0004210 (LandPlants) Phylogenetic Tree(s): OG_02_0004210_tree ,
OG_03_0004353 (SeedPlants) Phylogenetic Tree(s): OG_03_0004353_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g19860.1
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00202360 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
AT1G26370 No alias RNA helicase family protein 0.03 Archaeplastida
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.04 Archaeplastida
AT2G35340 MEE29 helicase domain-containing protein 0.04 Archaeplastida
AT5G13010 EMB3011 RNA helicase family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000984.27 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
GSVIVT01007911001 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.04 Archaeplastida
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.07 Archaeplastida
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.06 Archaeplastida
Gb_22388 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.04 Archaeplastida
Gb_30670 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida
Gb_34264 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.03 Archaeplastida
MA_34468g0010 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Mp4g16380.1 No alias RNA helicase (Prp2) 0.03 Archaeplastida
Mp7g03460.1 No alias RNA helicase (Prp16) 0.06 Archaeplastida
Pp3c15_1470V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c1_9270V3.1 No alias ATP-dependent RNA helicase, putative 0.03 Archaeplastida
Pp3c23_5290V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Pp3c9_18320V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Solyc03g115390.4.1 No alias RNA helicase (Prp2) 0.05 Archaeplastida
Solyc05g015040.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Solyc07g039550.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.04 Archaeplastida
Zm00001e001487_P003 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.09 Archaeplastida
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.11 Archaeplastida
Zm00001e022095_P001 No alias RNA helicase (Prp2) 0.03 Archaeplastida
Zm00001e036358_P005 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Zm00001e038305_P001 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.04 Archaeplastida
AMTR_s00025p00202360 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 LandPlants
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 LandPlants
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.06 LandPlants
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 LandPlants
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 LandPlants
Pp3c1_9270V3.1 No alias ATP-dependent RNA helicase, putative 0.03 LandPlants
Solyc07g039550.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 LandPlants
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.11 LandPlants
AMTR_s00025p00202360 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 SeedPlants
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 SeedPlants
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.05 SeedPlants
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 SeedPlants
Solyc07g039550.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 SeedPlants
Zm00001e014112_P001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.09 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003029 S1_domain 282 351
IPR007502 Helicase-assoc_dom 979 1067
IPR011709 DUF1605 1125 1200
IPR011545 DEAD/DEAH_box_helicase_dom 593 743
IPR001650 Helicase_C 785 917
No external refs found!