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  5. LOC_Os06g30020.1

LOC_Os06g30020.1 (LOC_Os06g30020)


Aliases : LOC_Os06g30020

Description : component ZCCHC8 of Nuclear Exosome Targeting (NEXT) activation complex


Gene families : OG0004396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g30020.1

Target Alias Description ECC score Gene Family Method Actions
AT5G38600 No alias Proline-rich spliceosome-associated (PSP) family protein... 0.04 OrthoFinder output from all 47 species
Adi_g010863 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
Adi_g031216 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13090 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.05 OrthoFinder output from all 47 species
Cre07.g340550 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g05083 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
Ehy_g12214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_14574 No alias component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
Len_g20965 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.05 OrthoFinder output from all 47 species
Lfl_g03270 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.05 OrthoFinder output from all 47 species
Nbi_g21419 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.07 OrthoFinder output from all 47 species
Ore_g38534 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
Pnu_g20212 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
Solyc03g045060.3.1 Solyc03g045060 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.05 OrthoFinder output from all 47 species
Spa_g07889 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
Zm00001e022737_P001 Zm00001e022737 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0035658 Mon1-Ccz1 complex IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR006568 PSP_pro-rich 337 374
No external refs found!