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  5. LOC_Os06g29020.1

LOC_Os06g29020.1 (LOC_Os06g29020)


Aliases : LOC_Os06g29020

Description : RNA polymerase-IV-positioning factor (SHH). transcription factor (SAWADEE)


Gene families : OG0001794 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001794_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g29020.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g043959 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Als_g00757 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.05 OrthoFinder output from all 47 species
Ceric.18G005800.1 Ceric.18G005800 RNA polymerase-IV-positioning factor *(SHH) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g07737 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012111 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Sam_g00809 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.04 OrthoFinder output from all 47 species
Sam_g39861 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Solyc10g007130.4.1 Solyc10g007130 RNA polymerase-IV-positioning factor (SHH).... 0.03 OrthoFinder output from all 47 species
Tin_g32107 No alias RNA polymerase-IV-positioning factor *(SHH) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e009676_P002 Zm00001e009676 RNA polymerase-IV-positioning factor (SHH).... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 13 75
IPR032001 SAWADEE_dom 126 253
No external refs found!