LOC_Os06g23460.1 (LOC_Os06g23460)


Aliases : LOC_Os06g23460

Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 483.0)


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g23460.1

Target Alias Description ECC score Gene Family Method Actions
AT1G51580 No alias RNA-binding KH domain-containing protein 0.03 OrthoFinder output from all 47 species
AT2G03110 No alias RNA binding;nucleic acid binding 0.03 OrthoFinder output from all 47 species
AT5G15270 No alias RNA-binding KH domain-containing protein 0.06 OrthoFinder output from all 47 species
AT5G64390 HEN4 RNA-binding KH domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g008962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g010429 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g028830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055224 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074054 HEN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g092270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g128615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04093 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11460 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09715 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15857 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19267 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04253 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Aop_g19887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g62599 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015733 No alias not classified & original description: CDS=260-2488 0.04 OrthoFinder output from all 47 species
Azfi_s0194.g057204 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Azfi_s0280.g062273 No alias not classified & original description: CDS=315-2570 0.03 OrthoFinder output from all 47 species
Cba_g03276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06665 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07339 HEN4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12024 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12254 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.05 OrthoFinder output from all 47 species
Cba_g24288 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g71670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G007100.1 Ceric.14G007100 not classified & original description: pacid=50632910... 0.02 OrthoFinder output from all 47 species
Ceric.17G032000.1 Ceric.17G032000 regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ceric.25G027100.1 Ceric.25G027100 not classified & original description: pacid=50594480... 0.02 OrthoFinder output from all 47 species
Ceric.32G028300.1 Ceric.32G028300 not classified & original description: pacid=50598029... 0.04 OrthoFinder output from all 47 species
Ceric.32G061200.1 Ceric.32G061200 not classified & original description: pacid=50597564... 0.02 OrthoFinder output from all 47 species
Dac_g05129 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g11897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g16018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g24061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07829 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01031037001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_18830 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Gb_31686 No alias RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
LOC_Os08g10030.1 LOC_Os08g10030 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02093 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.04 OrthoFinder output from all 47 species
Lfl_g03080 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430861g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_12604g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
Msp_g10485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03833 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g04462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06520 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g09995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g14000 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Ppi_g01057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12504 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g106020.3.1 HEN4, Solyc01g106020 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
Solyc02g067210.3.1 Solyc02g067210 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.05 OrthoFinder output from all 47 species
Solyc04g077060.3.1 Solyc04g077060 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
Solyc05g007810.3.1 Solyc05g007810 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Solyc08g048500.3.1 Solyc08g048500 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g22547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004486_P005 Zm00001e004486 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e012623_P002 Zm00001e012623 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Zm00001e037033_P001 Zm00001e037033 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
Zm00001e039986_P003 Zm00001e039986 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 424 491
IPR004088 KH_dom_type_1 586 649
IPR004088 KH_dom_type_1 188 257
No external refs found!