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  5. LOC_Os06g23440.1

LOC_Os06g23440.1 (LOC_Os06g23440)


Aliases : LOC_Os06g23440

Description : assembly factor (eIF1A) of eIF1


Gene families : OG0002330 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002330_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g23440.1
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00147020 evm_27.TU.AmTr_v1... Protein biosynthesis.translation... 0.04 OrthoFinder output from all 47 species
AMTR_s00146p00027250 evm_27.TU.AmTr_v1... Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Azfi_s0036.g025777 No alias assembly factor (eIF1A) of eIF1 & original description: CDS=1-438 0.03 OrthoFinder output from all 47 species
Cba_g49264 No alias assembly factor (eIF1A) of eIF1 & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003743 translation initiation factor activity IEA Interproscan
BP GO:0006413 translational initiation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR006196 RNA-binding_domain_S1_IF1 32 93
No external refs found!