LOC_Os06g20610.1 (LOC_Os06g20610)

Aliases : LOC_Os06g20610

Description : E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana (sp|q84k34|sil10_arath : 107.0)

Gene families : OG0000462 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000462_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g20610.1

Target	Alias	Description	ECC score	Gene Family Method
AT2G41980	No alias	Protein with RING/U-box and TRAF-like domains	0.02	OrthoFinder output from all 47 species
Als_g12148	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g15041	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g06921	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g50728	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07537	SINAT2	E3 ubiquitin ligase *(SINA) & original description: none	0.03	OrthoFinder output from all 47 species
Gb_35017	No alias	SINA-class E3 ligase	0.03	OrthoFinder output from all 47 species
Lfl_g10480	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.03	OrthoFinder output from all 47 species
MA_9566834g0010	No alias	SINA-class E3 ligase	0.02	OrthoFinder output from all 47 species
Mp3g21220.1	SINAT2	SINA-class E3 ligase	0.03	OrthoFinder output from all 47 species
Ore_g12483	SINAT2	E3 ubiquitin ligase *(SINA) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009112	No alias	E3 ubiquitin ligase *(SINA) & original description: CDS=987-1913	0.02	OrthoFinder output from all 47 species
Sam_g13394	No alias	E3 ubiquitin ligase *(SINA) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e017793_P002	Zm00001e017793	SINA-class E3 ligase	0.07	OrthoFinder output from all 47 species
Zm00001e027144_P001	Zm00001e027144	SINA-class E3 ligase	0.02	OrthoFinder output from all 47 species
Zm00001e031318_P001	Zm00001e031318	SINA-class E3 ligase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0004866	endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030414	peptidase inhibitor activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0061134	peptidase regulator activity	IEP	HCCA
MF	GO:0061135	endopeptidase regulator activity	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018121	7-in-absentia-prot_TRAF-dom	40	175

External Links

No external refs found!

LOC_Os06g20610.1 (LOC_Os06g20610)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation