LOC_Os06g20354.1 (LOC_Os06g20354)

Aliases : LOC_Os06g20354

Description : Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana (sp|q9szl5|pp356_arath : 122.0)

Gene families : OG0012203 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012203_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g20354.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00166290	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g38150...	0.03	OrthoFinder output from all 47 species
AMTR_s00022p00050920	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g38150...	0.04	OrthoFinder output from all 47 species
Zm00001e041548_P001	Zm00001e041548	Pentatricopeptide repeat-containing protein At4g38150...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000439	Ribosomal_L15e	2	54
IPR033443	PPR_long	203	311
IPR002885	Pentatricopeptide_repeat	172	196

External Links

No external refs found!

LOC_Os06g20354.1 (LOC_Os06g20354)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation