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  5. LOC_Os06g20030.1

LOC_Os06g20030.1 (LOC_Os06g20030)


Aliases : LOC_Os06g20030

Description : Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana (sp|q67xl4|y3544_arath : 162.0)


Gene families : OG0001914 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001914_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g20030.1
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00011400 evm_27.TU.AmTr_v1... Uncharacterized CRM domain-containing protein At3g25440,... 0.02 OrthoFinder output from all 47 species
AMTR_s00066p00206210 evm_27.TU.AmTr_v1... Uncharacterized CRM domain-containing protein At3g25440,... 0.02 OrthoFinder output from all 47 species
AT3G27550 No alias RNA-binding CRS1 / YhbY (CRM) domain protein 0.04 OrthoFinder output from all 47 species
Adi_g008013 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09890 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39701 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032387001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species
Len_g19656 No alias splicing factor *(CFM9) & original description: none 0.05 OrthoFinder output from all 47 species
Mp2g03710.1 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species
Nbi_g10778 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s3404.g028763 No alias splicing factor *(CFM9) & original description: CDS=72-884 0.03 OrthoFinder output from all 47 species
Solyc01g105090.3.1 Solyc01g105090 Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species
Spa_g10764 No alias splicing factor *(CFM9) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027517_P001 Zm00001e027517 Uncharacterized CRM domain-containing protein At3g25440,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 182 266
No external refs found!