LOC_Os06g16980.1 (LOC_Os06g16980)

Aliases : LOC_Os06g16980

Description : type-Ia DNA topoisomerase

Gene families : OG0003699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003699_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g16980.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00253660	evm_27.TU.AmTr_v1...	Cell cycle.organelle machineries.DNA replication.type-Ia...	0.03	OrthoFinder output from all 47 species
AT4G31210	No alias	DNA topoisomerase, type IA, core	0.09	OrthoFinder output from all 47 species
Als_g48687	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07546	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0066.g036119	No alias	type-Ia DNA topoisomerase & original description: CDS=286-3858	0.03	OrthoFinder output from all 47 species
Cba_g27398	No alias	type-Ia DNA topoisomerase & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g78123	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z115300.1	Ceric.1Z115300	not classified & original description: pacid=50604734...	0.05	OrthoFinder output from all 47 species
Dac_g46291	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01035576001	No alias	Cell cycle.organelle machineries.DNA replication.type-Ia...	0.05	OrthoFinder output from all 47 species
Len_g08848	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g25830.1	No alias	type-Ia DNA topoisomerase	0.03	OrthoFinder output from all 47 species
Msp_g13526	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g47727	No alias	type-Ia DNA topoisomerase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g24909	No alias	type-Ia DNA topoisomerase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g17408	No alias	type-Ia DNA topoisomerase & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0226.g026330	No alias	type-Ia DNA topoisomerase & original description: CDS=286-4206	0.04	OrthoFinder output from all 47 species
Sam_g34353	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g081910.2.1	Solyc02g081910	type-Ia DNA topoisomerase	0.04	OrthoFinder output from all 47 species
Zm00001e036824_P001	Zm00001e036824	type-Ia DNA topoisomerase	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013497	Topo_IA_cen	432	616
IPR013497	Topo_IA_cen	671	926
IPR025589	Toprim_C_rpt	1033	1093
IPR025589	Toprim_C_rpt	1108	1141
IPR013498	Topo_IA_Znf	969	1004
IPR006171	TOPRIM_domain	298	417

External Links

No external refs found!

LOC_Os06g16980.1 (LOC_Os06g16980)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation