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  5. LOC_Os06g15360.1

LOC_Os06g15360.1 (RAD23-3, RAD23C,...)


Aliases : RAD23-3, RAD23C, LOC_Os06g15360

Description : shuttle protein (RAD23)


Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g15360.1
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
Adi_g081473 RAD23D ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Aop_g07923 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Aop_g31214 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Cre08.g366400 RAD23B, RAD23 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dde_g08965 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g06028 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Msp_g06770 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g09383 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Pp3c10_8490V3.1 RAD23B, RAD23,... Rad23 UV excision repair protein family 0.01 OrthoFinder output from all 47 species
Spa_g18087 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Tin_g19292 RAD23B, RAD23 ubiquiTin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Tin_g30534 RAD23B, RAD23 ubiquiTin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e030951_P001 RAD23D, Zm00001e030951 shuttle protein (RAD23) 0.02 OrthoFinder output from all 47 species
Zm00001e036768_P002 RAD23D, Zm00001e036768 shuttle protein (RAD23) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006012 galactose metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0042255 ribosome assembly IEP HCCA
BP GO:0042256 cytosolic ribosome assembly IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR015360 XPC-bd 284 339
IPR015940 UBA 165 203
IPR015940 UBA 367 402
IPR000626 Ubiquitin-like_dom 3 76
No external refs found!