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  5. LOC_Os06g12450.1

LOC_Os06g12450.1 (SS2, AtSS2, LOC_Os06g12450)


Aliases : SS2, AtSS2, LOC_Os06g12450

Description : starch synthase (SSII)


Gene families : OG0001429 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001429_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g12450.1
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Ala_g06429 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene30910.t1 SSI1, ATSS1,... EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Gb_33234 SS2, AtSS2 starch synthase (SSII) 0.03 OrthoFinder output from all 47 species
Ore_g07958 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g26481 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e030868_P001 SS2, AtSS2,... starch synthase (SSII) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001296 Glyco_trans_1 621 771
IPR013534 Starch_synth_cat_dom 320 563
No external refs found!