LOC_Os06g12110.1 (LOC_Os06g12110)

Aliases : LOC_Os06g12110

Description : transcription factor (mTERF)

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g12110.1
Cluster	HCCA: Cluster_150

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00117910	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s01360p00009540	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
Aop_g10671	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g33464	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.30G015700.1	Ceric.30G015700	mTERF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g22736	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17694	PTAC15	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Gb_07257	PTAC15	TAC15 cofactor of plastid-encoded RNA polymerase....	0.02	OrthoFinder output from all 47 species
Gb_15298	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Lfl_g08103	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_10083329g0010	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
MA_10427666g0020	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_10429074g0010	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
MA_3151g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_57842g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_593288g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Pir_g33567	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g32507	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g072520.3.1	Solyc04g072520	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e018894_P001	Zm00001e018894	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e022322_P001	Zm00001e022322	transcription factor (mTERF)	0.1	OrthoFinder output from all 47 species
Zm00001e027097_P001	Zm00001e027097	transcription factor (mTERF)	0.05	OrthoFinder output from all 47 species
Zm00001e031638_P001	Zm00001e031638	transcription factor (mTERF)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0009116	nucleoside metabolic process	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	HCCA
CC	GO:0030132	clathrin coat of coated pit	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	250	343
IPR003690	MTERF	86	201

External Links

No external refs found!

LOC_Os06g12110.1 (LOC_Os06g12110)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation