LOC_Os06g12060.1 (LOC_Os06g12060)

Aliases : LOC_Os06g12060

Description : transcription factor (mTERF)

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g12060.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00239860	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AT1G21150	No alias	Mitochondrial transcription termination factor family protein	0.03	OrthoFinder output from all 47 species
AT1G61990	No alias	Mitochondrial transcription termination factor family protein	0.03	OrthoFinder output from all 47 species
Aev_g04588	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g12578	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g30338	No alias	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g14738	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g02967	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g13193	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_07257	PTAC15	TAC15 cofactor of plastid-encoded RNA polymerase....	0.03	OrthoFinder output from all 47 species
MA_10209606g0010	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
MA_31885g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Zm00001e015906_P001	Zm00001e015906	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Zm00001e027097_P001	Zm00001e027097	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	249	343
IPR003690	MTERF	84	303
IPR003690	MTERF	564	824

External Links

No external refs found!

LOC_Os06g12060.1 (LOC_Os06g12060)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation