LOC_Os06g09420.1 (LOC_Os06g09420)

Aliases : LOC_Os06g09420

Description : transcription factor (REM)

Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g09420.1

Target	Alias	Description	ECC score	Gene Family Method
Aop_g06897	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_07025	No alias	transcription factor (REM)	0.03	OrthoFinder output from all 47 species
Nbi_g17465	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g11941	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g14325	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g49592	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g56976	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000624_P003	Zm00001e000624	transcription factor (REM)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	139	229

External Links

No external refs found!