LOC_Os06g07878.1 (PAC1, LOC_Os06g07878)

Aliases : PAC1, LOC_Os06g07878

Description : component alpha type-3 of 26S proteasome

Gene families : OG0004222 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004222_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g07878.1
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method	Actions
Mp1g16770.1	PAC1	component alpha type-3 of 26S proteasome	0.02	OrthoFinder output from all 47 species
Pp3c10_5250V3.1	PAC1, Pp3c10_5250	20S proteasome alpha subunit C1	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	IEA	Interproscan
MF	GO:0004298	threonine-type endopeptidase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEA	Interproscan
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	IEA	Interproscan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000426	Proteasome_asu_N	5	27
IPR001353	Proteasome_sua/b	30	214

External Links

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LOC_Os06g07878.1 (PAC1, LOC_Os06g07878)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation