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  5. LOC_Os06g07780.1

LOC_Os06g07780.1 (ATVAMP711, VAMP711,...)


Aliases : ATVAMP711, VAMP711, LOC_Os06g07780

Description : VAMP7-type R-type SNARE longin protein


Gene families : OG0002036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g07780.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00133900 VAMP714,... Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
AT5G22360 VAMP714, ATVAMP714 vesicle-associated membrane protein 714 0.02 OrthoFinder output from all 47 species
Adi_g021410 ATVAMP711, VAMP711 R-type VAMP7-group component of SNARE longin membrane... 0.05 OrthoFinder output from all 47 species
Adi_g033637 ATVAMP711, VAMP711 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Ceric.05G034000.1 ATVAMP711,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Cre06.g278172 ATVAMP711, VAMP711 Vesicle trafficking.SNARE target membrane recognition... 0.01 OrthoFinder output from all 47 species
Dde_g02689 ATVAMP711, VAMP711 R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012184 VAMP714, ATVAMP714 R-type VAMP7-group component of SNARE longin membrane... 0.04 OrthoFinder output from all 47 species
Sam_g08656 No alias R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Spa_g00918 VAMP714, ATVAMP714 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0070449 elongin complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001388 Synaptobrevin-like 125 212
IPR010908 Longin_dom 29 109
No external refs found!