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  5. LOC_Os06g07540.1

LOC_Os06g07540.1 (LOC_Os06g07540)


Aliases : LOC_Os06g07540

Description : no hits & (original description: none)


Gene families : OG0001520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g07540.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00064900 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G78070 No alias Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g04655 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Dde_g25423 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
GSVIVT01014841001 No alias No description available 0.03 OrthoFinder output from all 47 species
Sam_g18139 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Solyc04g072890.4.1 Solyc04g072890 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e003440_P005 Zm00001e003440 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e031051_P005 Zm00001e031051 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e036380_P002 Zm00001e036380 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e036885_P006 Zm00001e036885 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 320 357
No external refs found!