1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g06560.1

LOC_Os06g06560.1 (SSI1, ATSS1, SSI,...)


Aliases : SSI1, ATSS1, SSI, LOC_Os06g06560

Description : starch synthase (SSI)


Gene families : OG0001429 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001429_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g06560.1

Target Alias Description ECC score Gene Family Method Actions
AT5G24300 SSI1, ATSS1, SSI Glycogen/starch synthases, ADP-glucose type 0.11 OrthoFinder output from all 47 species
Aev_g04105 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Als_g20539 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02293 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08363 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0001.g000433 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: CDS=512-2494 0.02 OrthoFinder output from all 47 species
Cba_g04027 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G059800.1 SS2, AtSS2,... not classified & original description: pacid=50634171... 0.01 OrthoFinder output from all 47 species
Dac_g32464 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04884 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g04935 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g19552 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26629 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04999 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20941 SS2, AtSS2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011429001 SS2, AtSS2 Carbohydrate metabolism.starch... 0.01 OrthoFinder output from all 47 species
Lfl_g01990 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g25350.1 SSI1, ATSS1, SSI starch synthase (SSI) 0.04 OrthoFinder output from all 47 species
Msp_g38859 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06738 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07560 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07958 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g36405 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g14059 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06445 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31466 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000793 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: CDS=352-2862 0.01 OrthoFinder output from all 47 species
Tin_g26129 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e030868_P001 SS2, AtSS2,... starch synthase (SSII) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR001296 Glyco_trans_1 444 597
IPR013534 Starch_synth_cat_dom 135 391
No external refs found!