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  5. LOC_Os06g04290.1

LOC_Os06g04290.1 (LOC_Os06g04290)


Aliases : LOC_Os06g04290

Description : component RPS20 of SSU proteome


Gene families : OG0001982 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001982_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g04290.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00105050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder output from all 47 species
AT3G45030 No alias Ribosomal protein S10p/S20e family protein 0.27 OrthoFinder output from all 47 species
AT3G47370 No alias Ribosomal protein S10p/S20e family protein 0.23 OrthoFinder output from all 47 species
AT5G62300 No alias Ribosomal protein S10p/S20e family protein 0.26 OrthoFinder output from all 47 species
Ala_g32242 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ala_g39099 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Als_g08426 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Als_g22907 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Als_g43556 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aob_g00267 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Aob_g09673 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g23202 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s0104.g044711 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Ceric.10G040000.1 Ceric.10G040000 component *(uS10) of small ribosomal-subunit (SSU)... 0.18 OrthoFinder output from all 47 species
Ceric.35G056300.1 Ceric.35G056300 component *(uS10) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.28 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder output from all 47 species
Cre16.g660150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder output from all 47 species
Dac_g24720 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Dcu_g24923 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Dde_g22072 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g10630 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01018553001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder output from all 47 species
Len_g05031 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g04390 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g05114 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
MA_103406g0010 No alias component RPS20 of SSU proteome 0.13 OrthoFinder output from all 47 species
MA_10429759g0010 No alias component RPS20 of SSU proteome 0.21 OrthoFinder output from all 47 species
Mp2g09440.1 No alias component RPS20 of SSU proteome 0.13 OrthoFinder output from all 47 species
Msp_g24560 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Msp_g24561 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Msp_g36291 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ore_g21012 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pir_g54843 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g57765 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Pir_g63796 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Pnu_g12315 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c1_21860V3.1 Pp3c1_21860 Ribosomal protein S10p/S20e family protein 0.08 OrthoFinder output from all 47 species
Ppi_g28188 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015887 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g14098 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g23471 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.2 OrthoFinder output from all 47 species
Sam_g48982 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo115495 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Solyc01g096580.3.1 Solyc01g096580 component RPS20 of SSU proteome 0.23 OrthoFinder output from all 47 species
Solyc01g096590.3.1 Solyc01g096590 component RPS20 of SSU proteome 0.18 OrthoFinder output from all 47 species
Spa_g27726 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Spa_g35271 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Tin_g26346 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Zm00001e001045_P001 Zm00001e001045 component RPS20 of SSU proteome 0.18 OrthoFinder output from all 47 species
Zm00001e036579_P001 Zm00001e036579 component RPS20 of SSU proteome 0.23 OrthoFinder output from all 47 species
Zm00001e038574_P001 Zm00001e038574 component RPS20 of SSU proteome 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 30 124
No external refs found!