LOC_Os06g03790.1 (LOC_Os06g03790)

Aliases : LOC_Os06g03790

Description : component mtRPL29 of large ribosomal subunit proteome

Gene families : OG0005790 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005790_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g03790.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G07830	No alias	ribosomal protein L29 family protein	0.03	OrthoFinder output from all 47 species
Adi_g044665	No alias	component *(uL29m) of large mitoribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ala_g00232	No alias	component *(uL29m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Als_g12869	No alias	component *(uL29m) of large mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0078.g038228	No alias	component *(uL29m) of large mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ceric.09G042100.1	Ceric.09G042100	component *(uL29m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Cre13.g588310	No alias	Protein biosynthesis.organelle translation...	0.01	OrthoFinder output from all 47 species
Dac_g03974	No alias	component *(uL29m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Lfl_g03642	No alias	component *(uL29m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
MA_10431503g0010	No alias	component mtRPL29 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008367	No alias	component *(uL29m) of large mitoribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sam_g47538	No alias	component *(uL29m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g47539	No alias	component *(uL29m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Solyc03g114050.3.1	Solyc03g114050	component mtRPL29 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000313	organellar ribosome	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005761	mitochondrial ribosome	IEA	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
CC	GO:0032299	ribonuclease H2 complex	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1905354	exoribonuclease complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010729	Ribosomal_L47_mit	38	125

External Links

No external refs found!

LOC_Os06g03790.1 (LOC_Os06g03790)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation