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  5. LOC_Os06g03690.2

LOC_Os06g03690.2 (LOC_Os06g03690)


Aliases : LOC_Os06g03690

Description : NSR RNA splicing regulator


Gene families : OG0000722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000722_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os06g03690.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00116460 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Adi_g078877 No alias RNA splicing regulator *(NSR) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01038597001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Gb_18526 No alias NSR RNA splicing regulator 0.03 OrthoFinder output from all 47 species
Msp_g24910 No alias RNA splicing regulator *(NSR) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g06674 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024840 No alias RNA splicing regulator *(NSR) & original description: CDS=178-987 0.02 OrthoFinder output from all 47 species
Solyc06g052080.4.1 Solyc06g052080 NSR RNA splicing regulator 0.03 OrthoFinder output from all 47 species
Solyc06g052145.1.1 Solyc06g052145 NSR RNA splicing regulator 0.02 OrthoFinder output from all 47 species
Zm00001e036636_P004 Zm00001e036636 NSR RNA splicing regulator 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 165 235
No external refs found!