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  5. LOC_Os06g02120.1

LOC_Os06g02120.1 (EMB976, LOC_Os06g02120)


Aliases : EMB976, LOC_Os06g02120

Description : Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana (sp|o04647|pp399_arath : 655.0)


Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g02120.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00132600 EMB976,... Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
AT5G27270 EMB976 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g059643 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0030.g024406 EMB976 plastidial splicing factor *(PDM4) & original... 0.03 OrthoFinder output from all 47 species
Ceric.11G008200.1 EMB976, Ceric.11G008200 plastidial splicing factor *(PDM4) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g11292 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01024409001 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.09 OrthoFinder output from all 47 species
MA_10434955g0010 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
Mp1g22180.1 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.02 OrthoFinder output from all 47 species
Sam_g51412 No alias plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g097000.3.1 EMB976, Solyc03g097000 Pentatricopeptide repeat-containing protein At5g27270... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 425 533
IPR033443 PPR_long 252 396
IPR002885 Pentatricopeptide_repeat 168 217
IPR002885 Pentatricopeptide_repeat 648 691
No external refs found!