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  5. LOC_Os02g16839.1

LOC_Os02g16839.1


Description : alpha-class expansin


Gene families : OG_01_0000024 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000024_tree ,
OG_02_0000028 (LandPlants) Phylogenetic Tree(s): OG_02_0000028_tree ,
OG_03_0015957 (SeedPlants) Phylogenetic Tree(s): OG_03_0015957_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g16839.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00230920 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
AMTR_s00077p00063420 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00119p00058870 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
AT3G15370 ATHEXP ALPHA... expansin 12 0.03 Archaeplastida
AT5G39260 EXPA21, EXP21,... expansin A21 0.02 Archaeplastida
AT5G39290 ATEXP26, ATHEXP... expansin A26 0.05 Archaeplastida
AT5G39300 ATEXPA25,... expansin A25 0.01 Archaeplastida
AT5G56320 ATEXP14, EXPA14,... expansin A14 0.01 Archaeplastida
GSVIVT01011437001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
GSVIVT01014362001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.08 Archaeplastida
GSVIVT01028474001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
GSVIVT01032935001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
Gb_01048 No alias alpha-class expansin 0.03 Archaeplastida
Gb_07424 No alias alpha-class expansin 0.07 Archaeplastida
Gb_07437 No alias alpha-class expansin 0.05 Archaeplastida
Gb_20678 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os01g14660.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os02g51040.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os03g06000.1 No alias alpha-class expansin 0.01 Archaeplastida
LOC_Os03g06050.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os03g31480.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os06g01920.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os10g30330.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os10g30340.1 No alias alpha-class expansin 0.02 Archaeplastida
LOC_Os10g39110.1 No alias alpha-class expansin 0.02 Archaeplastida
MA_10020g0010 No alias alpha-class expansin 0.07 Archaeplastida
MA_100868g0010 No alias alpha-class expansin 0.01 Archaeplastida
MA_10425823g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_130258g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_14588g0010 No alias alpha-class expansin 0.01 Archaeplastida
MA_18265g0010 No alias alpha-class expansin 0.01 Archaeplastida
MA_37884g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_45587g0020 No alias alpha-class expansin 0.03 Archaeplastida
MA_474624g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_4979g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_7218g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_91602g0010 No alias Expansin-A2 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Pp3c11_12000V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c12_4560V3.1 No alias expansin A9 0.02 Archaeplastida
Pp3c14_18450V3.1 No alias expansin A14 0.01 Archaeplastida
Pp3c7_12870V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c8_870V3.1 No alias expansin A1 0.01 Archaeplastida
Smo230202 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.01 Archaeplastida
Solyc02g088100.3.1 No alias alpha-class expansin 0.02 Archaeplastida
Solyc06g051800.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Solyc08g080060.4.1 No alias alpha-class expansin 0.02 Archaeplastida
Solyc09g010860.4.1 No alias alpha-class expansin 0.01 Archaeplastida
Zm00001e003887_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e003888_P001 No alias alpha-class expansin 0.01 Archaeplastida
Zm00001e003889_P001 No alias alpha-class expansin 0.01 Archaeplastida
Zm00001e014220_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e014221_P001 No alias Expansin-A22 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e036693_P001 No alias alpha-class expansin 0.01 Archaeplastida
AMTR_s00012p00230920 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 LandPlants
AMTR_s00119p00058870 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
AT3G15370 ATHEXP ALPHA... expansin 12 0.03 LandPlants
GSVIVT01011437001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
GSVIVT01014362001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.08 LandPlants
GSVIVT01028474001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
Gb_01048 No alias alpha-class expansin 0.03 LandPlants
Gb_07424 No alias alpha-class expansin 0.07 LandPlants
Gb_07437 No alias alpha-class expansin 0.05 LandPlants
Gb_20678 No alias alpha-class expansin 0.03 LandPlants
LOC_Os01g14660.1 No alias alpha-class expansin 0.02 LandPlants
LOC_Os03g06050.1 No alias alpha-class expansin 0.03 LandPlants
LOC_Os03g31480.1 No alias alpha-class expansin 0.03 LandPlants
LOC_Os10g30330.1 No alias alpha-class expansin 0.02 LandPlants
LOC_Os10g30340.1 No alias alpha-class expansin 0.02 LandPlants
LOC_Os10g39110.1 No alias alpha-class expansin 0.02 LandPlants
MA_10425823g0010 No alias alpha-class expansin 0.02 LandPlants
MA_130258g0010 No alias alpha-class expansin 0.03 LandPlants
MA_14588g0010 No alias alpha-class expansin 0.01 LandPlants
MA_18265g0010 No alias alpha-class expansin 0.01 LandPlants
MA_45587g0020 No alias alpha-class expansin 0.03 LandPlants
Solyc02g088100.3.1 No alias alpha-class expansin 0.02 LandPlants
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.02 LandPlants
Solyc08g080060.4.1 No alias alpha-class expansin 0.02 LandPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 210 287
IPR009009 RlpA-like_DPBB 75 162
No external refs found!