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  5. LOC_Os06g01620.1

LOC_Os06g01620.1 (ATHAM3, HAM3, LOM3,...)


Aliases : ATHAM3, HAM3, LOM3, LOC_Os06g01620

Description : transcription factor (GRAS)


Gene families : OG0002830 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002830_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os06g01620.1

Target Alias Description ECC score Gene Family Method Actions
AT4G36710 No alias GRAS family transcription factor 0.04 OrthoFinder output from all 47 species
Aev_g12963 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g21901 HAM2, LOM2, ATHAM2 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21450 ATHAM3, HAM3, LOM3 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005674 No alias GRAS-type transcription factor & original description: CDS=1-2607 0.03 OrthoFinder output from all 47 species
Zm00001e000046_P001 ATHAM3, HAM3,... transcription factor (GRAS) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 126 479
No external refs found!