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  5. LOC_Os05g51790.1

LOC_Os05g51790.1 (SMC5, LOC_Os05g51790)


Aliases : SMC5, LOC_Os05g51790

Description : component SMC5 of homologous recombination repair Smc5-Smc6 complex


Gene families : OG0004405 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004405_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g51790.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00247730 SMC5,... DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
Aev_g18350 SMC5 component *(SMC5) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Aob_g06730 SMC5 component *(SMC5) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Azfi_s0032.g024698 SMC5 component *(SMC5) of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
Gb_33241 SMC5 component SMC5 of homologous recombination repair... 0.02 OrthoFinder output from all 47 species
MA_10432022g0010 SMC5 Structural maintenance of chromosomes protein 5... 0.04 OrthoFinder output from all 47 species
MA_114320g0010 SMC5 Structural maintenance of chromosomes protein 5... 0.02 OrthoFinder output from all 47 species
Mp3g00700.1 SMC5 component SMC5 of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Ore_g44710 SMC5 component *(SMC5) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Pir_g39085 SMC5 component *(SMC5) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009290 SMC5 component *(SMC5) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Smo174036 SMC5 DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
Zm00001e013059_P001 SMC5, Zm00001e013059 component SMC5 of homologous recombination repair... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 40 1008
No external refs found!