1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os05g50900.1

LOC_Os05g50900.1 (FMA, LOC_Os05g50900)


Aliases : FMA, LOC_Os05g50900

Description : transcription factor (bHLH)


Gene families : OG0000768 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g50900.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00089p00043950 FMA,... RNA biosynthesis.transcriptional activation.bHLH... 0.06 OrthoFinder output from all 47 species
AT1G72210 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g10924 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10378 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29143.t1 FMA, Aspi01Gene29143 bHLH-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene50659.t1 FMA, Aspi01Gene50659 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62410.t1 FMA, Aspi01Gene62410 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.18G037700.1 Ceric.18G037700 bHLH-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.21G040300.1 Ceric.21G040300 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g22750 FMA bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g23650 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10264 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_21105 FMA transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_32351 FMA transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_34544 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_141469g0010 FMA transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Msp_g31314 FMA bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01150 FMA bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g098720.3.1 Solyc01g098720 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc08g076820.3.1 bHLH071, Solyc08g076820 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e009989_P001 Zm00001e009989 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e015494_P002 Zm00001e015494 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e023271_P001 Zm00001e023271 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e024824_P001 SPCH, Zm00001e024824 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e026643_P001 FMA, Zm00001e026643 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e041403_P001 Zm00001e041403 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 256 307
No external refs found!