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  5. LOC_Os05g49590.1

LOC_Os05g49590.1 (SPA1, LOC_Os05g49590)


Aliases : SPA1, LOC_Os05g49590

Description : protein kinase (PEK). regulator component SPA of COP1-SPA E3 ligase subcomplex. regulator component SPA of COP1-SPA light signal transduction ubiquitin E3 ligase complex


Gene families : OG0000638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000638_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os05g49590.1
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AT4G11110 SPA2 SPA1-related 2 0.03 OrthoFinder output from all 47 species
Ceric.23G014900.1 SPA4, Ceric.23G014900 regulatory component *(SPA) of COP1-SPA light signal... 0.04 OrthoFinder output from all 47 species
Dac_g44670 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Dcu_g03040 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.02 OrthoFinder output from all 47 species
Dcu_g06516 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Dde_g23541 SPA1 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Len_g48626 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.01 OrthoFinder output from all 47 species
Lfl_g16193 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Ore_g10809 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.01 OrthoFinder output from all 47 species
Pir_g05451 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.02 OrthoFinder output from all 47 species
Pir_g13039 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Smo171333 FUS1, EMB168,... External stimuli response.light.red/far red... 0.02 OrthoFinder output from all 47 species
Spa_g55052 SPA4 regulatory component *(Spa) of COP1-Spa light signal... 0.02 OrthoFinder output from all 47 species
Zm00001e015983_P001 FUS1, EMB168,... protein kinase (PEK). component COP1 of COP1-SPA E3... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1004 1036
IPR001680 WD40_repeat 917 952
No external refs found!