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  5. LOC_Os05g49230.1

LOC_Os05g49230.1 (LOC_Os05g49230)


Aliases : LOC_Os05g49230

Description : no hits & (original description: none)


Gene families : OG0004018 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004018_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g49230.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00229900 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT4G25730 No alias FtsJ-like methyltransferase family protein 0.08 OrthoFinder output from all 47 species
Adi_g010921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g084654 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01128 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22298 No alias MRM2-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007467 No alias MRM2-type rRNA methyltransferase & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g66001 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.33G005200.1 Ceric.33G005200 MRM2-type rRNA methyltransferase & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.16 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre12.g529500 No alias No description available 0.09 OrthoFinder output from all 47 species
Dac_g07280 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g09125 No alias MRM2-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g08608 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023801001 No alias No description available 0.05 OrthoFinder output from all 47 species
Lfl_g02148 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
MA_10429557g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_158214g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Nbi_g01309 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20920 No alias MRM2-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11085 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01371 No alias MRM2-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15947 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Smo404107 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc10g046930.3.1 Solyc10g046930 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g020810.2.1 Solyc11g020810 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Spa_g06497 No alias MRM2-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e026556_P001 Zm00001e026556 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Zm00001e032456_P001 Zm00001e032456 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
BP GO:0032259 methylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002877 RNA_MeTrfase_FtsJ_dom 22 201
IPR012920 rRNA_MeTfrase_SPB1-like_C 590 789
IPR024576 rRNA_MeTfrase_Spb1_DUF3381 234 382
No external refs found!