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  5. LOC_Os05g48990.1

LOC_Os05g48990.1 (STIP, HB-3, WOX9,...)


Aliases : STIP, HB-3, WOX9, LOC_Os05g48990

Description : transcription factor (WOX)


Gene families : OG0001319 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001319_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g48990.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00149750 WOX2,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AMTR_s00021p00189010 STIP, HB-3,... RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
AMTR_s00405p00009920 WUS, PGA6, WUS1,... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
AT1G46480 WOX4 WUSCHEL related homeobox 4 0.03 OrthoFinder output from all 47 species
AT2G01500 PFS2, HOS9, WOX6 Homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G28610 WOX3, PRS1, PRS Homeodomain-like superfamily protein 0.14 OrthoFinder output from all 47 species
AT2G33880 STIP, HB-3, WOX9 homeobox-3 0.05 OrthoFinder output from all 47 species
AT3G11260 WOX5 WUSCHEL related homeobox 5 0.02 OrthoFinder output from all 47 species
AT5G45980 STPL, WOX8 WUSCHEL related homeobox 8 0.03 OrthoFinder output from all 47 species
Adi_g053615 STIP, HB-3, WOX9 WOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63553.t1 STPL, WOX8,... WOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0051.g031311 WUS, PGA6, WUS1 WOX-type transcription factor & original description: CDS=1-912 0.03 OrthoFinder output from all 47 species
Ceric.19G009000.1 STIP, HB-3,... WOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.19G009200.1 STPL, WOX8,... WOX-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.19G069000.1 STPL, WOX8,... WOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z063700.1 WOX4, Ceric.1Z063700 WOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z064400.1 STPL, WOX8,... WOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.27G012000.1 WUS, PGA6, WUS1,... WOX-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.32G042100.1 STPL, WOX8,... WOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g33241 STPL, WOX8 WOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50892 STIP, HB-3, WOX9 WOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29650 STPL, WOX8 WOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008424001 WOX1 RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01009453001 WOX4 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Gb_27283 WOX3, PRS1, PRS transcription factor (WOX) 0.04 OrthoFinder output from all 47 species
Gb_29958 WOX1 transcription factor (WOX) 0.02 OrthoFinder output from all 47 species
MA_10234279g0010 STPL, WOX8 transcription factor (WOX) 0.04 OrthoFinder output from all 47 species
MA_10344604g0010 STIP, HB-3, WOX9 transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
MA_42637g0010 WOX2 transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
MA_747816g0010 STPL, WOX8 transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
MA_8832398g0010 WOX2 transcription factor (WOX) 0.05 OrthoFinder output from all 47 species
MA_921642g0010 WOX1 transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
Msp_g29674 STIP, HB-3, WOX9 WOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014086 STPL, WOX8 WOX-type transcription factor & original description: CDS=1-2016 0.04 OrthoFinder output from all 47 species
Solyc03g118770.4.1 WOX1, Solyc03g118770 transcription factor (WOX) 0.04 OrthoFinder output from all 47 species
Solyc06g075567.1.1 WOX3, PRS1, PRS,... transcription factor (WOX) 0.05 OrthoFinder output from all 47 species
Solyc11g072770.2.1 WOX3, PRS1, PRS,... transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
Solyc11g072790.2.1 WOX3, PRS1, PRS,... transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
Zm00001e006644_P002 WUS, PGA6, WUS1,... transcription factor (WOX) 0.08 OrthoFinder output from all 47 species
Zm00001e009121_P001 WOX3, PRS1, PRS,... transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
Zm00001e019245_P001 WOX5, Zm00001e019245 transcription factor (WOX) 0.02 OrthoFinder output from all 47 species
Zm00001e024169_P001 WOX3, PRS1, PRS,... transcription factor (WOX) 0.04 OrthoFinder output from all 47 species
Zm00001e024170_P001 Zm00001e024170 WUSCHEL-related homeobox 3B OS=Zea mays... 0.06 OrthoFinder output from all 47 species
Zm00001e028720_P001 WOX5, Zm00001e028720 transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
Zm00001e028776_P002 WOX2, Zm00001e028776 transcription factor (WOX) 0.03 OrthoFinder output from all 47 species
Zm00001e029534_P001 WOX3, PRS1, PRS,... transcription factor (WOX) 0.1 OrthoFinder output from all 47 species
Zm00001e032433_P003 STIP, HB-3,... transcription factor (WOX) 0.13 OrthoFinder output from all 47 species
Zm00001e041785_P001 WOX4, Zm00001e041785 transcription factor (WOX) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 70 129
No external refs found!