LOC_Os05g48870.1 (ARF3, ETT, LOC_Os05g48870)

Aliases : ARF3, ETT, LOC_Os05g48870

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g48870.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00267580	ARF19, IAA22,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AMTR_s00148p00046020	ARF16,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AMTR_s00155p00082980	ARF16,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Aev_g26950	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g22304	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.28G004000.1	HSS, ARF1-BP,...	ARF-type transcription factor & original description:...	0.06	OrthoFinder output from all 47 species
Dac_g05781	ARF6	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g14113	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01020805001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01021552001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_39685	ARF6	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os01g13520.1	ARF11, LOC_Os01g13520	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
MA_103763g0010	ARF6	Auxin response factor 6 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_10432580g0010	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Msp_g15236	ARF1	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g31549	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g35318	ARF3, ETT	ARF-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Pnu_g06380	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g25160	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g096070.3.1	ARF9, Solyc01g096070	transcription factor (ARF)	0.07	OrthoFinder output from all 47 species
Solyc05g047460.3.1	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc05g056040.3.1	ARF11, Solyc05g056040	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e003229_P002	ARF6, Zm00001e003229	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e006577_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Zm00001e013639_P001	ARF19, IAA22,...	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e016366_P002	ARF11, Zm00001e016366	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e018126_P002	ARF6, Zm00001e018126	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e020205_P004	ARF3, ETT, Zm00001e020205	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e025163_P001	ARF6, Zm00001e025163	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Zm00001e030325_P003	ARF6, Zm00001e030325	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Zm00001e032135_P002	ARF3, ETT, Zm00001e032135	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Zm00001e032423_P002	ARF3, ETT, Zm00001e032423	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e041910_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008289	lipid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	268	348
IPR003340	B3_DNA-bd	142	243

External Links

No external refs found!

LOC_Os05g48870.1 (ARF3, ETT, LOC_Os05g48870)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation