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  5. LOC_Os05g48690.1

LOC_Os05g48690.1 (LOC_Os05g48690)


Aliases : LOC_Os05g48690

Description : transcription factor (Trihelix)


Gene families : OG0000970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g48690.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00263040 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.03 OrthoFinder output from all 47 species
Aev_g12375 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g33001 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07755 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19343 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24190 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30168.t1 Aspi01Gene30168 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67255.t1 Aspi01Gene67255 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g09634 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.38G051400.1 Ceric.38G051400 Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dcu_g18013 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25573 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016703001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.03 OrthoFinder output from all 47 species
LOC_Os02g35690.1 LOC_Os02g35690 transcription factor (Trihelix) 0.04 OrthoFinder output from all 47 species
MA_8003390g0010 No alias transcription factor (Trihelix) 0.01 OrthoFinder output from all 47 species
Mp4g09730.1 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Ore_g12684 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31049 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26369 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0126.g021712 No alias Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e020188_P001 Zm00001e020188 transcription factor (Trihelix) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!