LOC_Os05g47650.1 (EDF2, AtRAV2, TEM2,...)


Aliases : EDF2, AtRAV2, TEM2, RAV2, RAP2.8, LOC_Os05g47650

Description : transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g47650.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00238950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 OrthoFinder output from all 47 species
AT1G25560 TEM1, EDF1 AP2/B3 transcription factor family protein 0.02 OrthoFinder output from all 47 species
Als_g17658 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene28731.t1 TEM1, EDF1,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Dac_g43760 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02670 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01019699001 NGA1 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
Gb_33917 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
LOC_Os01g04750.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.07 OrthoFinder output from all 47 species
LOC_Os06g01860.1 LOC_Os06g01860 transcription factor (RAV/NGATHA) 0.07 OrthoFinder output from all 47 species
LOC_Os08g06120.1 NGA1, LOC_Os08g06120 transcription factor (RAV/NGATHA) 0.09 OrthoFinder output from all 47 species
LOC_Os11g05740.1 LOC_Os11g05740 transcription factor (RAV/NGATHA) 0.05 OrthoFinder output from all 47 species
LOC_Os12g06080.1 LOC_Os12g06080 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
MA_10436315g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
MA_18923g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.06 OrthoFinder output from all 47 species
MA_246350g0010 EDF4, RAV1 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
MA_70029g0010 NGA1 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
Solyc04g007000.2.1 EDF4, RAV1,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Solyc05g009790.1.1 EDF4, RAV1,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Solyc12g098460.2.1 Solyc12g098460 AP2/ERF and B3 domain-containing transcription factor... 0.03 OrthoFinder output from all 47 species
Spa_g28812 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Tin_g30531 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e016956_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.05 OrthoFinder output from all 47 species
Zm00001e024165_P001 Zm00001e024165 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Zm00001e026443_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.07 OrthoFinder output from all 47 species
Zm00001e028111_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Zm00001e032325_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 193 308
IPR001471 AP2/ERF_dom 67 115
No external refs found!