LOC_Os05g47500.1 (PGP9, LOC_Os05g47500)

Aliases : PGP9, LOC_Os05g47500

Description : subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g47500.1
Cluster	HCCA: Cluster_347

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00132920	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
AT2G47000	ATPGP4, PGP4, ABCB4, MDR4	ATP binding cassette subfamily B4	0.07	OrthoFinder output from all 47 species
AT3G28345	No alias	ABC transporter family protein	0.01	OrthoFinder output from all 47 species
AT3G62150	PGP21	P-glycoprotein 21	0.02	OrthoFinder output from all 47 species
AT4G18050	PGP9	P-glycoprotein 9	0.01	OrthoFinder output from all 47 species
AT4G25960	PGP2	P-glycoprotein 2	0.02	OrthoFinder output from all 47 species
AT5G46540	PGP7	P-glycoprotein 7	0.02	OrthoFinder output from all 47 species
Adi_g029160	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g056640	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g056650	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g39147	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g26174	No alias	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Als_g39233	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Aob_g18500	ABCB19,...	subfamily ABCB transporter & original description: none	0.11	OrthoFinder output from all 47 species
Aob_g24344	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g24610	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g08993	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g22138	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g42964	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g55125	ABCB14, ATABCB14, PGP14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene42794.t1	ATPGP4, PGP4,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene46501.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene46501.t2	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0039.g026389	PGP11	subfamily ABCB transporter & original description: CDS=323-4378	0.01	OrthoFinder output from all 47 species
Cba_g75977	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.02G084300.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.02	OrthoFinder output from all 47 species
Dac_g23401	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g35376	PGP21	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Dac_g45466	PGP11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g26046	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g33169	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02960	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g23811	ABCB19,...	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01021365001	PGP9	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
GSVIVT01028256001	PGP11	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
GSVIVT01032578001	No alias	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Gb_10215	No alias	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
Gb_36503	No alias	serine carboxypeptidase. subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
LOC_Os01g18670.1	PGP21, LOC_Os01g18670	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
LOC_Os02g46680.1	PGP2, LOC_Os02g46680	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os05g04600.1	PGP11, LOC_Os05g04600	ABC transporter B family member 4 OS=Arabidopsis...	0.09	OrthoFinder output from all 47 species
Len_g06285	PGP1, ABCB1, ATPGP1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Len_g46613	PGP1, ABCB1, ATPGP1	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
MA_100742g0020	PGP16	ABC transporter B family member 16 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_10134765g0010	PGP11	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
MA_8519205g0010	PGP17	ABC transporter B family member 17 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_9148200g0010	No alias	ABC transporter B family member 15 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp2g02910.1	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp2g06270.1	PGP20	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
Mp2g11920.1	ABCB19,...	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
Mp7g04390.1	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mpzg01120.1	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Msp_g26680	PGP11	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Msp_g39983	PGP3, MDR3	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Nbi_g32847	PGP21	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29607	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g35743	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14316	PGP2	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g47037	PGP11	subfamily ABCB transporter & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g47038	PGP9	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g56055	PGP21	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g60650	PGP21	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c1_7210V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006153	PGP11	subfamily ABCB transporter & original description: CDS=261-4235	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019197	No alias	subfamily ABCB transporter & original description: CDS=1-2220	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0214.g026004	No alias	subfamily ABCB transporter & original description: CDS=930-4592	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0478.g027423	PGP11	subfamily ABCB transporter & original description: CDS=139-3981	0.03	OrthoFinder output from all 47 species
Sam_g27139	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g34273	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo123915	PGP11	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Smo148837	ABCB19,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Smo231714	No alias	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Smo410515	ABCB19,...	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Smo92485	ABCB19,...	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Solyc03g005860.4.1	PGP11, Solyc03g005860	subfamily ABCB transporter	0.01	OrthoFinder output from all 47 species
Solyc06g009280.1.1	PGP11, Solyc06g009280	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Solyc11g067300.2.1	PGP11, Solyc11g067300	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Tin_g11244	ABCB19,...	subfamily ABCB transporter & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g31718	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e017444_P002	PGP21, Zm00001e017444	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Zm00001e023274_P001	PGP2, Zm00001e023274	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	696	799
IPR011527	ABC1_TM_dom	808	918
IPR011527	ABC1_TM_dom	47	319
IPR003439	ABC_transporter-like_ATP-bd	388	536
IPR003439	ABC_transporter-like_ATP-bd	989	1138

External Links

No external refs found!

LOC_Os05g47500.1 (PGP9, LOC_Os05g47500)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation