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  5. LOC_Os05g46330.1

LOC_Os05g46330.1 (LOC_Os05g46330)


Aliases : LOC_Os05g46330

Description : SWC4 recruitment factor of SWR1 chromatin remodeling complex


Gene families : OG0003748 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003748_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g46330.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00249970 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Aop_g00600 No alias recruitment factor of SWR1 chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Aspi01Gene48781.t1 Aspi01Gene48781 recruitment factor of SWR1 chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Azfi_s0305.g063922 No alias recruitment factor of SWR1 chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001477.5 No alias No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01028167001 No alias Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Mp7g18640.1 No alias SWC4 recruitment factor of SWR1 chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Nbi_g01940 No alias recruitment factor of SWR1 chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Ore_g09349 No alias recruitment factor of SWR1 chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Smo272178 No alias Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Solyc01g079210.3.1 Solyc01g079210 SWC4 recruitment factor of SWR1 chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Zm00001e014015_P003 Zm00001e014015 SWC4 recruitment factor of SWR1 chromatin remodeling complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
CC GO:0070531 BRCA1-A complex IEP HCCA
CC GO:0070552 BRISC complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032563 DAMP1_SANT-like 105 179
No external refs found!