LOC_Os05g44050.1 (ATRAB7B, RAB7B,...)

Aliases : ATRAB7B, RAB7B, ATRABG3F, RAB71, RABG3F, LOC_Os05g44050

Description : G-class RAB GTPase

Gene families : OG0000865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g44050.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G22740	ATRABG3B,...	RAB GTPase homolog G3B	0.05	OrthoFinder output from all 47 species
Adi_g021268	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g20926	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09532	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g12280	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g37396	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g43029	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g05640	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g14494	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g01198	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07308	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g31627	ATRAB7B, RAB7B,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Mp8g13820.1	AtRABG3d, RABG3d	G-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Msp_g03381	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g07967	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011168	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: CDS=38-799	0.02	OrthoFinder output from all 47 species
Sam_g07442	No alias	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g19659	No alias	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g120750.3.1	AtRABG3d,...	G-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Spa_g55684	ATRABG2, ATRAB7A, RAB7A	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g05383	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	HCCA
MF	GO:0004421	hydroxymethylglutaryl-CoA synthase activity	IEP	HCCA
MF	GO:0004602	glutathione peroxidase activity	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	10	177

External Links

No external refs found!

LOC_Os05g44050.1 (ATRAB7B, RAB7B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation