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  5. LOC_Os05g43310.1

LOC_Os05g43310.1 (PSBW, LOC_Os05g43310)


Aliases : PSBW, LOC_Os05g43310

Description : component PsbW of PS-II complex


Gene families : OG0002050 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002050_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g43310.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266120 PSBW,... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.09 OrthoFinder output from all 47 species
AT2G30570 PSBW photosystem II reaction center W 0.13 OrthoFinder output from all 47 species
Aev_g47226 MAC3A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04986 No alias component *(PsbW) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Als_g12837 PSBW component *(PsbW) of PS-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Als_g56334 PSBW component *(PsbW) of PS-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Aob_g15176 No alias component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32667 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g35726 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g30138 PSBW component *(PsbW) of PS-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene42600.t1 PSBW, Aspi01Gene42600 component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene45376.t1 PSBW, Aspi01Gene45376 component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0036.g025757 PSBW component *(PsbW) of PS-II complex & original... 0.04 OrthoFinder output from all 47 species
Ceric.06G036500.1 PSBW, Ceric.06G036500 component *(PsbW) of PS-II complex & original... 0.06 OrthoFinder output from all 47 species
Ceric.32G066400.1 PSBW, Ceric.32G066400 component *(PsbW) of PS-II complex & original... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001234.7 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.06 OrthoFinder output from all 47 species
Dac_g08641 PSBW component *(PsbW) of PS-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g00119 PSBW component *(PsbW) of PS-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g18523 PSBW component *(PsbW) of PS-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g41397 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06290 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g20782 PSBW component *(PsbW) of PS-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g00627 PSBW component *(PsbW) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g04368 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000743001 PSBW Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.11 OrthoFinder output from all 47 species
GSVIVT01036277001 PSBW Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.06 OrthoFinder output from all 47 species
Gb_40726 PSBW component PsbW of PS-II complex 0.04 OrthoFinder output from all 47 species
Lfl_g03716 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g17355 PSBW component *(PsbW) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19837 No alias component *(PsbW) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
MA_10431532g0010 PSBW component PsbW of PS-II complex 0.08 OrthoFinder output from all 47 species
Mp5g14190.1 PSBW component PsbW of PS-II complex 0.11 OrthoFinder output from all 47 species
Msp_g20236 PSBW component *(PsbW) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g20237 PSBW component *(PsbW) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g44518 PSBW component *(PsbW) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10497 PSBW component *(PsbW) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g23251 PSBW component *(PsbW) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g31677 PSBW component *(PsbW) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g06296 PSBW component *(PsbW) of PS-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Pp3c18_6770V3.1 PSBW, Pp3c18_6770 photosystem II reaction center W 0.06 OrthoFinder output from all 47 species
Pp3c22_16330V3.1 PSBW, Pp3c22_16330 photosystem II reaction center W 0.06 OrthoFinder output from all 47 species
Ppi_g11136 PSBW component *(PsbW) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g61591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019011 PSBW component *(PsbW) of PS-II complex & original... 0.02 OrthoFinder output from all 47 species
Sam_g39267 No alias component *(PsbW) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g084050.4.1 PSBW, Solyc06g084050 component PsbW of PS-II complex 0.1 OrthoFinder output from all 47 species
Solyc09g065910.3.1 PSBW, Solyc09g065910 component PsbW of PS-II complex 0.05 OrthoFinder output from all 47 species
Spa_g01488 PSBW component *(PsbW) of PS-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Spa_g23538 PSBW component *(PsbW) of PS-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g48859 PSBW component *(PsbW) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g52574 PSBW component *(PsbW) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g24382 PSBW component *(PsbW) of PS-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g24383 PSBW component *(PsbW) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e019660_P002 PSBW, Zm00001e019660 component PsbW of PS-II complex 0.07 OrthoFinder output from all 47 species
Zm00001e027386_P002 PSBW, Zm00001e027386 component PsbW of PS-II complex 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR009806 PSII_PsbW_class2 16 128
No external refs found!