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  5. LOC_Os05g41520.1

LOC_Os05g41520.1 (RHC1A, LOC_Os05g41520)


Aliases : RHC1A, LOC_Os05g41520

Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 144.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g41520.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00263520 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT3G13430 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g017038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g017488 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aev_g01231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g46210 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g05181 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene15226.t1 Aspi01Gene15226 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene58136.t1 Aspi01Gene58136 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g73123 AIP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51480 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g01127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11152 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Gb_22124 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.04 OrthoFinder output from all 47 species
Ore_g04701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g29204 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g08830 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g05103 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05315 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g20368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 174 216
IPR039525 RNF126-like_zinc-ribbon 6 38
No external refs found!