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Aliases : LOC_Os05g41240
Description : G2-like GARP transcription factor
Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os05g41240.1 | |
| Cluster | HCCA: Cluster_65 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g004438 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g023512 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g025472 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g068620 | No alias | GARP subgroup PHL transcription factor & original... | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g076600 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g088380 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g06660 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g20512 | No alias | transcription factor *(CLAUSA) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g11209 | No alias | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g08971 | No alias | GARP subgroup PHL transcription factor & original... | 0.01 | OrthoFinder output from all 47 species | |
| Als_g33847 | KAN, KAN1 | KANADI-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g04252 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g07729 | No alias | GARP subgroup PHL transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g15949 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g30442 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g40723 | No alias | transcription factor *(CLAUSA) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g08540 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene03462.t1 | Aspi01Gene03462 | transcription factor *(CLAUSA) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene25096.t1 | Aspi01Gene25096 | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene35964.t1 | Aspi01Gene35964 | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene53070.t1 | Aspi01Gene53070 | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene59765.t1 | Aspi01Gene59765 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene64388.t1 | Aspi01Gene64388 | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0078.g038309 | No alias | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0319.g064433 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g11144 | No alias | transcription factor *(CLAUSA) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g08384 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g02748 | No alias | GARP subgroup PHL transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g06265 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g05828 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g46936 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g11610 | No alias | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g14665 | No alias | transcription factor *(CLAUSA) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g21996 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g30049 | No alias | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g31338 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g15893 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g46829 | No alias | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g48215 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g56630 | No alias | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g05894 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06998 | No alias | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g27534 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| MA_10432937g0010 | KAN4, ATS | G2-like GARP transcription factor | 0.02 | OrthoFinder output from all 47 species | |
| MA_636769g0010 | PHL1 | G2-like GARP transcription factor | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g07330.1 | No alias | G2-like GARP transcription factor | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g18176 | KAN, KAN1 | KANADI-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g10253 | No alias | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g19105 | KAN, KAN1 | KANADI-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g44093 | KAN4, ATS | transcription factor *(CLAUSA) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g01267 | No alias | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g13544 | PHR1, AtPHR1 | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g55133 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g16072 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g21082 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g25413 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g22170 | No alias | GARP subgroup PHL transcription factor & original... | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g39066 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0011.g005338 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0042.g012676 | No alias | GARP subgroup HHO transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0183.g024956 | No alias | not classified & original description: CDS=676-2103 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g06418 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g49915 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Smo423505 | No alias | RNA biosynthesis.transcriptional activation.MYB... | 0.02 | OrthoFinder output from all 47 species | |
| Smo438636 | No alias | RNA biosynthesis.transcriptional activation.MYB... | 0.01 | OrthoFinder output from all 47 species | |
| Solyc06g008200.3.1 | PHL1, Solyc06g008200 | PHR1 transcription factor involved in proline synthesis... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc10g076460.2.1 | Solyc10g076460 | G2-like GARP transcription factor | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g04247 | No alias | GARP subgroup PHL transcription factor & original... | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g22319 | No alias | GARP subgroup PHL transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g51060 | No alias | GARP subgroup PHL transcription factor & original... | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g56754 | No alias | GARP subgroup PHL transcription factor & original... | 0.01 | OrthoFinder output from all 47 species | |
| Tin_g03896 | No alias | GARP subgroup PHL transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e003093_P001 | KAN4, ATS, Zm00001e003093 | G2-like GARP transcription factor | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e009653_P001 | Zm00001e009653 | G2-like GARP transcription factor | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
| No external refs found! |