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  5. LOC_Os05g39680.1

LOC_Os05g39680.1 (LOC_Os05g39680)


Aliases : LOC_Os05g39680

Description : component SNX2 of Retromer protein recycling complex


Gene families : OG0001331 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001331_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g39680.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AT3G56140 No alias Protein of unknown function (DUF399 and DUF3411) 0.06 OrthoFinder output from all 47 species
Adi_g112967 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000863.14 No alias Protein RETICULATA-RELATED 4, chloroplastic... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020941.40 LCD1 Protein RETICULATA-RELATED 4, chloroplastic... 0.01 OrthoFinder output from all 47 species
Cre03.g177350 No alias Protein RETICULATA-RELATED 4, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dac_g22117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032735001 No alias Protein RETICULATA-RELATED 6, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os01g72710.1 LOC_Os01g72710 Protein RETICULATA-RELATED 4, chloroplastic... 0.03 OrthoFinder output from all 47 species
Pnu_g08153 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012218 No alias not classified & original description: CDS=101-1345 0.02 OrthoFinder output from all 47 species
Smo177305 No alias Protein RETICULATA-RELATED 5, chloroplastic... 0.02 OrthoFinder output from all 47 species
Spa_g52656 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13626 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e019415_P003 Zm00001e019415 Protein RETICULATA-RELATED 6, chloroplastic... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0035091 phosphatidylinositol binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR015404 Vps5_C 270 499
IPR007314 Cofac_haem-bd_dom 638 858
IPR001683 PX_dom 92 211
IPR021825 RETICULATA-related 965 1148
No external refs found!