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  5. LOC_Os05g37410.1

LOC_Os05g37410.1 (DML1, ROS1, LOC_Os05g37410)


Aliases : DML1, ROS1, LOC_Os05g37410

Description : methylcytosine-specific DNA glycosylase (ROS1). bifunctional DNA glycosylase/lyase (ROS1)


Gene families : OG0001282 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001282_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g37410.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00215000 DME,... DNA damage response.DNA repair mechanisms.base excision... 0.03 OrthoFinder output from all 47 species
AT3G10010 DML2 demeter-like 2 0.03 OrthoFinder output from all 47 species
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.04 OrthoFinder output from all 47 species
Dac_g15510 DME methylcytosine-specific DNA glycosylase *(ROS1) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01033777001 DML1, ROS1 DNA damage response.DNA repair mechanisms.base excision... 0.04 OrthoFinder output from all 47 species
GSVIVT01034713001 DME DNA damage response.DNA repair mechanisms.base excision... 0.07 OrthoFinder output from all 47 species
MA_10430382g0010 DME Transcriptional activator DEMETER OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g20128 DML1, ROS1 methylcytosine-specific DNA glycosylase *(ROS1) &... 0.02 OrthoFinder output from all 47 species
Ore_g38428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49432 DML1, ROS1 methylcytosine-specific DNA glycosylase *(ROS1) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002829 No alias not classified & original description: CDS=1-711 0.03 OrthoFinder output from all 47 species
Smo182514 DML1, ROS1 Chromatin organisation.DNA methylation.ROS1-mediated DNA... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR028925 RRM_DME 1711 1811
No external refs found!