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Aliases : ATPAL1, PAL1, LOC_Os05g35290
Description : phenylalanine ammonia lyase (PAL)
Gene families : OG0000270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000270_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00024p00201680 | ATPAL2, PAL2,... | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.1 | OrthoFinder output from all 47 species | |
| AMTR_s00024p00202590 | ATPAL2, PAL2,... | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00032p00159210 | PAL4,... | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00148p00088930 | ATPAL1, PAL1,... | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.04 | OrthoFinder output from all 47 species | |
| AT2G37040 | ATPAL1, PAL1 | PHE ammonia lyase 1 | 0.05 | OrthoFinder output from all 47 species | |
| AT3G10340 | PAL4 | phenylalanine ammonia-lyase 4 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g005788 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g018721 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g059316 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g059368 | ATPAL1, PAL1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g084112 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g107906 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g01488 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g24727 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g34002 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g37142 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g62284 | ATPAL1, PAL1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene05558.t1 | PAL4, Aspi01Gene05558 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene07446.t1 | PAL4, Aspi01Gene07446 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene07514.t1 | PAL4, Aspi01Gene07514 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene18088.t1 | ATPAL1, PAL1,... | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene18089.t1 | ATPAL1, PAL1,... | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene20030.t1 | PAL4, Aspi01Gene20030 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene23282.t1 | PAL4, Aspi01Gene23282 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene41825.t1 | PAL4, Aspi01Gene41825 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0009.g011807 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2211 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0063.g035292 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2358 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0163.g054246 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2322 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0205.g057722 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2322 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g03360 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g04033 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g28767 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.14G035200.1 | PAL4, Ceric.14G035200 | EC_4.3 carbon-nitrogen lyase & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.1Z056200.1 | PAL4, Ceric.1Z056200 | EC_4.3 carbon-nitrogen lyase & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.35G045000.1 | PAL4, Ceric.35G045000 | EC_4.3 carbon-nitrogen lyase & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g09400 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g27041 | ATPAL2, PAL2 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g40579 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g01768 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Dcu_g08202 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g24302 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g33771 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g35691 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g16538 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g25081 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g08593 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g18475 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g25215 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01006148001 | PAL4 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01015124001 | ATPAL2, PAL2 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01015138001 | ATPAL2, PAL2 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01024292001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.08 | OrthoFinder output from all 47 species | |
| GSVIVT01024293001 | ATPAL1, PAL1 | Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01024295001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01024299001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01024303001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01024306001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01024315001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01025214001 | ATPAL1, PAL1 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025703001 | ATPAL2, PAL2 | Secondary metabolism.phenolics.p-coumaroyl-CoA... | 0.07 | OrthoFinder output from all 47 species | |
| Gb_16672 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.05 | OrthoFinder output from all 47 species | |
| Gb_31408 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_41796 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g41630.2 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g43760.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Len_g50108 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g14564 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| MA_123220g0010 | ATPAL2, PAL2 | phenylalanine ammonia lyase (PAL) | 0.05 | OrthoFinder output from all 47 species | |
| Mp1g05190.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Mp1g10150.1 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.04 | OrthoFinder output from all 47 species | |
| Mp4g14110.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.05 | OrthoFinder output from all 47 species | |
| Mp4g14130.1 | ATPAL2, PAL2 | Phenylalanine ammonia-lyase class 1 (Fragment)... | 0.05 | OrthoFinder output from all 47 species | |
| Mp4g14140.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Mp4g14160.1 | ATPAL2, PAL2 | phenylalanine ammonia lyase (PAL) | 0.08 | OrthoFinder output from all 47 species | |
| Mp4g14170.1 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.05 | OrthoFinder output from all 47 species | |
| Mp4g14210.1 | PAL4 | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Mp7g14880.1 | ATPAL1, PAL1 | phenylalanine ammonia lyase (PAL) | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g29412 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g37393 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g08420 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g16429 | ATPAL2, PAL2 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g21799 | ATPAL1, PAL1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g40427 | ATPAL2, PAL2 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g40543 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g18585 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g16134 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c10_21810V3.1 | PAL4, Pp3c10_21810 | phenylalanine ammonia-lyase 4 | 0.01 | OrthoFinder output from all 47 species | |
| Pp3c17_7320V3.1 | Pp3c17_7320 | No annotation | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c21_7640V3.1 | ATPAL2, PAL2, Pp3c21_7640 | phenylalanine ammonia-lyase 2 | 0.01 | OrthoFinder output from all 47 species | |
| Pp3c24_13110V3.1 | PAL4, Pp3c24_13110 | phenylalanine ammonia-lyase 4 | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g30570 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g57238 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0017.g007129 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2310 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0157.g023740 | ATPAL2, PAL2 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-771 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0157.g023741 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: CDS=1-1545 | 0.02 | OrthoFinder output from all 47 species | |
| Solyc00g500095.1.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Solyc00g500353.1.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g042560.3.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.05 | OrthoFinder output from all 47 species | |
| Solyc03g071870.1.1 | ATPAL1, PAL1,... | Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g078280.3.1 | ATPAL2, PAL2,... | Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g056170.3.1 | ATPAL2, PAL2,... | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g007910.4.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Solyc09g007920.4.1 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.05 | OrthoFinder output from all 47 species | |
| Solyc10g011920.3.1 | ATPAL1, PAL1,... | Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc10g011930.1.1 | ATPAL1, PAL1,... | Phenylalanine ammonia-lyase OS=Solanum lycopersicum... | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g23160 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g23161 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g26458 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g08349 | PAL4 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g14732 | ATPAL1, PAL1 | EC_4.3 carbon-nitrogen lyase & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e005064_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e007572_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e007573_P001 | ATPAL2, PAL2,... | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e015154_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e015155_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e015156_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e015157_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e023032_P002 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e023033_P001 | ATPAL1, PAL1,... | phenylalanine ammonia lyase (PAL) | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0004664 | prephenate dehydratase activity | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| BP | GO:0006558 | L-phenylalanine metabolic process | IEP | HCCA |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009072 | aromatic amino acid metabolic process | IEP | HCCA |
| BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | HCCA |
| BP | GO:0009094 | L-phenylalanine biosynthetic process | IEP | HCCA |
| BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
| MF | GO:0016829 | lyase activity | IEP | HCCA |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | HCCA |
| MF | GO:0016836 | hydro-lyase activity | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0030247 | polysaccharide binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | HCCA |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
| BP | GO:1902221 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | IEP | HCCA |
| BP | GO:1902223 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001106 | Aromatic_Lyase | 62 | 530 |
| No external refs found! |