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  5. LOC_Os05g34780.1

LOC_Os05g34780.1 (LOC_Os05g34780)


Aliases : LOC_Os05g34780

Description : Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana (sp|q9sd34|c3h44_arath : 176.0)


Gene families : OG0001217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001217_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g34780.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00073140 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 19... 0.02 OrthoFinder output from all 47 species
AT5G63700 No alias zinc ion binding;DNA binding 0.03 OrthoFinder output from all 47 species
Adi_g106014 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g46580 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ala_g06673 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Aob_g19106 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Aop_g08568 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Ceric.03G088800.1 Ceric.03G088800 not classified & original description: pacid=50572957... 0.03 OrthoFinder output from all 47 species
Dcu_g40973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023195001 No alias Zinc finger CCCH domain-containing protein 19... 0.04 OrthoFinder output from all 47 species
Lfl_g06273 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Lfl_g35904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10283 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g35752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g58382 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010759 No alias not classified & original description: CDS=84-1793 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010885 No alias not classified & original description: CDS=39-962 0.03 OrthoFinder output from all 47 species
Sam_g30111 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52359 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.02 OrthoFinder output from all 47 species
Solyc02g084510.3.1 Solyc02g084510 Zinc finger CCCH domain-containing protein 44... 0.02 OrthoFinder output from all 47 species
Solyc11g062220.2.1 Solyc11g062220 Zinc finger CCCH domain-containing protein 19... 0.03 OrthoFinder output from all 47 species
Spa_g15744 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Spa_g27893 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09943 No alias protein factor (NERD) of non-canonical RdDM pathway &... 0.03 OrthoFinder output from all 47 species
Zm00001e019791_P001 Zm00001e019791 protein factor (NERD) of non-canonical RdDM pathway 0.02 OrthoFinder output from all 47 species
Zm00001e027036_P001 Zm00001e027036 Zinc finger CCCH domain-containing protein 19... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 279 326
IPR004343 Plus-3_dom 380 435
No external refs found!