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  5. LOC_Os05g32670.1

LOC_Os05g32670.1 (LOC_Os05g32670)


Aliases : LOC_Os05g32670

Description : Uncharacterized protein At5g19025 OS=Arabidopsis thaliana (sp|p0c8q9|y5902_arath : 122.0)


Gene families : OG0002276 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002276_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g32670.1
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AT3G01170 No alias Ribosomal protein L34e superfamily protein 0.03 OrthoFinder output from all 47 species
Ceric.03G075200.1 Ceric.03G075200 not classified & original description: pacid=50572776... 0.03 OrthoFinder output from all 47 species
Ehy_g02427 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004358 No alias not classified & original description: CDS=1-681 0.03 OrthoFinder output from all 47 species
Solyc02g067250.3.1 Solyc02g067250 Uncharacterized protein At5g19025 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g12660 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027203_P001 Zm00001e027203 Uncharacterized protein At5g19025 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e028875_P001 Zm00001e028875 Uncharacterized protein At5g19025 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e031602_P001 Zm00001e031602 Uncharacterized protein At5g19025 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!